IMPPAT Phytochemical information: 
Lygodinolide
Lygodinolide
Summary

SMILES: C=C1CC[C@H]2[C@@]([C@]31Oc1c(C3)c(=O)oc(c1C)C)(C)CC[C@@H]1[C@]2(C)CCC(=O)C1(C)C
InChI: InChI=1S/C27H36O4/c1-15-8-9-20-25(6)12-11-21(28)24(4,5)19(25)10-13-26(20,7)27(15)14-18-22(31-27)16(2)17(3)30-23(18)29/h19-20H,1,8-14H2,2-7H3/t19-,20+,25-,26+,27-/m0/s1
InChIKey: ABBZZTOIFXCLFD-YJHFSHLRSA-N
DeepSMILES: C=CCC[C@H][C@@][C@@]6OccC5)c=O)occ6C))C))))))))C)CC[C@@H][C@]6C)CCC=O)C6C)C
Scaffold Graph/Node/Bond level: C=C1CCC2C3CCC(=O)CC3CCC2C12Cc1c(ccoc1=O)O2
Scaffold Graph/Node level: CC1CCC2C3CCC(O)CC3CCC2C12CC1C(O)OCCC1O2
Scaffold Graph level: CC1CCC2C(CCC3C2CCC(C)C32CC3CCCC(C)C3C2)C1
Functional groups: C=C(C)C; CC(C)=O; c=O; cOC; coc
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Lipids and lipid-like molecules
ClassyFire Class: Prenol lipids
ClassyFire Subclass: Terpene lactones
NP Classifier Biosynthetic pathway: Terpenoids
NP Classifier Superclass: Meroterpenoids|Diterpenoids
NP Classifier Class: Breviane diterpenoids|Spriromeroterpenoids|Triketide meroterpenoids
Synonymous chemical names:
lygodinolide
External chemical identifiers:
CID:102059585; ZINC:ZINC000169669836
Chemical structure download
2D:2D MOL2D MOL22D SDF
3D:3D MOL3D MOL23D SDF3D PDB3D PDBQT
Lygodinolide
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 424.58
Log P RDKit 5.71
Topological polar surface area (Å2) RDKit 56.51
Number of hydrogen bond acceptors RDKit 4
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 27
Number of heavy atoms RDKit 31
Number of heteroatoms RDKit 4
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 5
Stereochemical complexity RDKit 0.19
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 8
Number of sp3 hybridized carbon atoms RDKit 19
Shape complexity RDKit 0.7
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 3
Number of aliphatic heterocycles RDKit 1
Number of aliphatic rings RDKit 4
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 1
Total number of rings RDKit 5
Number of saturated carbocycles RDKit 3
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 3
Number of Smallest Set of Smallest Rings (SSSR) RDKit 5
Lygodinolide
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 1
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.5008
Lygodinolide
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -5.52
Number of PAINS structural alerts SwissADME 0.0
Number of Brenk structural alerts SwissADME 1.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No