IMPPAT Phytochemical information: 
Amsacrine

Amsacrine
Summary

SMILES: COc1cc(ccc1Nc1c2ccccc2nc2c1cccc2)NS(=O)(=O)C
InChI: InChI=1S/C21H19N3O3S/c1-27-20-13-14(24-28(2,25)26)11-12-19(20)23-21-15-7-3-5-9-17(15)22-18-10-6-4-8-16(18)21/h3-13,24H,1-2H3,(H,22,23)
InChIKey: XCPGHVQEEXUHNC-UHFFFAOYSA-N
DeepSMILES: COcccccc6Nccccccc6ncc%10cccc6))))))))))))))))))NS=O)=O)C
Scaffold Graph/Node/Bond level: c1ccc(Nc2c3ccccc3nc3ccccc23)cc1
Scaffold Graph/Node level: C1CCC(NC2C3CCCCC3NC3CCCCC32)CC1
Scaffold Graph level: C1CCC(CC2C3CCCCC3CC3CCCCC32)CC1
Functional groups: cNS(C)(=O)=O; cNc; cOC; cnc
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Quinolines and derivatives
ClassyFire Subclass: Benzoquinolines
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Anthranilic acid alkaloids
NP Classifier Class: Quinazoline alkaloids
Synonymous chemical names:
lamarkine
External chemical identifiers:
CID:2179; ChEMBL:CHEMBL43; ChEBI:2687; ZINC:ZINC000003812923; FDASRS:00DPD30SOY; SureChEMBL:SCHEMBL4047; MolPort-006-129-370
Chemical structure download


Amsacrine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 393.47
Log P RDKit 4.51
Topological polar surface area (Å2) RDKit 80.32
Number of hydrogen bond acceptors RDKit 5
Number of hydrogen bond donors RDKit 2
Number of carbon atoms RDKit 21
Number of heavy atoms RDKit 28
Number of heteroatoms RDKit 7
Number of nitrogen atoms RDKit 3
Number of sulfur atoms RDKit 1
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 19
Number of sp3 hybridized carbon atoms RDKit 2
Shape complexity RDKit 0.1
Number of rotatable bonds RDKit 5
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 3
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 4
Total number of rings RDKit 4
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 4


Amsacrine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.4877


Amsacrine
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -5.85
Number of PAINS structural alerts SwissADME 1.0
Number of Brenk structural alerts SwissADME 1.0
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME Yes
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No


Amsacrine
Predicted human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000215659MAPK12700
ENSP00000219070MMP2800
ENSP00000262186KCNH2881
ENSP00000269305TP53938
ENSP00000293288BAX700
ENSP00000298139WRN700
ENSP00000312664CASP2700
ENSP00000329623BCL2700
ENSP00000354522TOP1739
ENSP00000396704TOP2B994
ENSP00000411532TOP2A992
ENSP00000417281MDM2700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.