IMPPAT Phytochemical information: 
Lysophosphatidylcholine

Lysophosphatidylcholine
Summary

SMILES: O[C@@H](COP(=O)(OCC[N+](C)(C)C)[O-])COC(=O)C
InChI: InChI=1S/C10H22NO7P/c1-9(12)16-7-10(13)8-18-19(14,15)17-6-5-11(2,3)4/h10,13H,5-8H2,1-4H3/t10-/m1/s1
InChIKey: RYCNUMLMNKHWPZ-SNVBAGLBSA-N
DeepSMILES: O[C@@H]COP=O)OCC[N+]C)C)C)))))[O-]))))COC=O)C
Functional groups: CO; COC(C)=O; COP(=O)([O-])OC; C[N+](C)(C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Lipids and lipid-like molecules
ClassyFire Class: Glycerophospholipids
ClassyFire Subclass: Glycerophosphocholines
NP Classifier Biosynthetic pathway: Fatty acids
NP Classifier Superclass: Glycerophospholipids
NP Classifier Class: Glycerophosphocholines
Synonymous chemical names:
choline, lysophosphatidyl, lysophosphatidylcholine
External chemical identifiers:
CID:5311264; ChEBI:138424; SureChEMBL:SCHEMBL19821626
Chemical structure download


Lysophosphatidylcholine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 299.26
Log P RDKit -0.88
Topological polar surface area (Å2) RDKit 105.12
Number of hydrogen bond acceptors RDKit 7
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 10
Number of heavy atoms RDKit 19
Number of heteroatoms RDKit 9
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 1
Stereochemical complexity RDKit 0.1
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 1
Number of sp3 hybridized carbon atoms RDKit 9
Shape complexity RDKit 0.9
Number of rotatable bonds RDKit 10
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 0
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 0


Lysophosphatidylcholine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 1
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.3346


Lysophosphatidylcholine
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Highly soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -9.33
Number of PAINS structural alerts SwissADME 0.0
Number of Brenk structural alerts SwissADME 2.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


Lysophosphatidylcholine
Predicted human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000264005LCAT883
ENSP00000306512IL8800
ENSP00000328818GPR132800
ENSP00000332656ENPP7700
ENSP00000361895MFSD2A700
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.