IMPPAT Phytochemical information: 
Psidinin B
Psidinin B
Summary

SMILES: OC1Cc2c(OC1c1cc(O)c(c(c1)O)O)cc(c1c2OC23C1C1OC(=O)C3C(=C(C2=O)O)c2c(O)c(O)c(c3-c4c(C(=O)OC5C(C1OC(=O)c23)OC(=O)c1cc(O)c(c(c1-c1c(C(=O)OC5)cc(c(c1O)O)O)O)O)cc(c(c4O)O)O)O)O
InChI: InChI=1S/C55H36O31/c56-14-7-21-10(3-20(62)44(81-21)9-1-15(57)33(63)16(58)2-9)45-26(14)31-47-48-46-22(8-80-50(75)11-4-17(59)34(64)37(67)23(11)24-12(52(77)83-46)5-18(60)35(65)38(24)68)82-51(76)13-6-19(61)36(66)39(69)25(13)27-29(53(78)85-48)28(41(71)43(73)40(27)70)30-32(54(79)84-47)55(31,86-45)49(74)42(30)72/h1-2,4-7,20,22,31-32,44,46-48,56-73H,3,8H2
InChIKey: JWYWLEDKHVAFKH-UHFFFAOYSA-N
DeepSMILES: OCCccOC6cccO)ccc6)O))O)))))))cccc6OCC5COC=O)C6C=CC9=O))O))ccO)cO)cc-ccC=O)OCCC%17OC=O)c%15%11))))OC=O)cccO)ccc6-ccC=O)OC%15)))cccc6O))O))O))))))O))O)))))))))))cccc6O))O))O))))))O)))))))))))))))O
Scaffold Graph/Node/Bond level: O=C1OCC2OC(=O)c3ccccc3-c3cccc4c3C(=O)OC(C2OC(=O)c2ccccc2-c2ccccc21)C1OC(=O)C2C4=CC(=O)C23Oc2c(ccc4c2CCC(c2ccccc2)O4)C13
Scaffold Graph/Node level: OC1OCC2OC(O)C3CCCCC3C3CCCC4C5CC(O)C67OC8C9CCC(C%10CCCCC%10)OC9CCC8C6C(OC(O)C57)C(OC(O)C34)C2OC(O)C2CCCCC2C2CCCCC12
Scaffold Graph level: CC1CCC2CC(C)C3CCCCC3C3CCCC4C5CC(C)C67CC8C9CCC(C%10CCCCC%10)CC9CCC8C6C(CC(C)C57)C(CC(C)C34)C2CC(C)C2CCCCC2C2CCCCC12
Functional groups: CO; COC(C)=O; cC(=O)OC; cC1=C(O)C(=O)CC1; cO; cOC
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Phenylpropanoids and polyketides
ClassyFire Class: Tannins
ClassyFire Subclass: Complex tannins
NP Classifier Biosynthetic pathway: Shikimates and Phenylpropanoids
NP Classifier Superclass: Phenolic acids (C6-C1)
NP Classifier Class: Gallotannins
Synonymous chemical names:
psidinin b
External chemical identifiers:
CID:131752719
Chemical structure download
2D:2D MOL2D MOL22D SDF
3D:3D MOL3D MOL23D SDF3D PDB3D PDBQT
Psidinin B
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 1192.86
Log P RDKit 2.13
Topological polar surface area (Å2) RDKit 531.17
Number of hydrogen bond acceptors RDKit 31
Number of hydrogen bond donors RDKit 18
Number of carbon atoms RDKit 55
Number of heavy atoms RDKit 86
Number of heteroatoms RDKit 31
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 9
Stereochemical complexity RDKit 0.16
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 44
Number of sp3 hybridized carbon atoms RDKit 11
Shape complexity RDKit 0.2
Number of rotatable bonds RDKit 1
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 6
Number of aliphatic rings RDKit 7
Number of aromatic carbocycles RDKit 6
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 6
Total number of rings RDKit 13
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 1
Number of saturated rings RDKit 1
Number of Smallest Set of Smallest Rings (SSSR) RDKit 13
Psidinin B
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 3
Lipinski’s rule of 5 filter RDKit Failed
Number of Ghose filter violations RDKit 3
Ghose filter RDKit Failed
Veber filter RDKit Bad
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.0637
Psidinin B
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.17
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -12.49
Number of PAINS structural alerts SwissADME 1.0
Number of Brenk structural alerts SwissADME 2.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes