IMPPAT Phytochemical information: 
Vincarubine
Vincarubine
Summary

SMILES: COC(=O)C1C2CCC34C1(CCN4C/C/2=CC)C1=CC(=O)C(=CC1=N3)c1cc2c(cc1OC)N(C1=C(CC3(C4C21CCN4CCC3)CC)C(=O)OC)C
InChI: InChI=1S/C43H50N4O6/c1-7-24-23-47-17-14-42-29-20-33(48)26(19-31(29)44-43(42,47)12-10-25(24)35(42)38(50)53-6)27-18-30-32(21-34(27)51-4)45(3)36-28(37(49)52-5)22-40(8-2)11-9-15-46-16-13-41(30,36)39(40)46/h7,18-21,25,35,39H,8-17,22-23H2,1-6H3/b24-7+
InChIKey: CLSRDWBICGYSOB-HCBMXOAHSA-N
DeepSMILES: COC=O)CCCCCC6CCN5C/C/%10=CC)))))))C=CC=O)C=CC6=N9)))cccccc6OC))))NC=CCCCC96CCN5CCC9))))))))CC))))C=O)OC)))))C
Scaffold Graph/Node/Bond level: C=C1CN2CCC34CC1CCC23N=C1C=C(c2ccc3c(c2)C25CCN6CCCC(CC=C2N3)C65)C(=O)C=C14
Scaffold Graph/Node level: CC1CN2CCC34CC1CCC23NC1CC(C2CCC3NC5CCC6CCCN7CCC5(C3C2)C67)C(O)CC14
Scaffold Graph level: CC1CC2CCC34CC1CCC23CC1CC(C2CCC3CC5CCC6CCCC7CCC5(C3C2)C67)C(C)CC14
Functional groups: C/C=C(/C)C; CN(C)C; COC(C)=O; cC1=CC2=NC(C)(N(C)C)CC2=CC1=O; cN(C)C(C)=C(C)C(=O)OC; cOC
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Aspidospermatan-type alkaloids
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Aspidosperma type
Synonymous chemical names:
vincarubine
External chemical identifiers:
CID:6442103
Chemical structure download
2D:2D MOL2D MOL22D SDF
3D:3D MOL3D MOL23D SDF3D PDB3D PDBQT
Vincarubine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 718.9
Log P RDKit 5.37
Topological polar surface area (Å2) RDKit 100.98
Number of hydrogen bond acceptors RDKit 10
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 43
Number of heavy atoms RDKit 53
Number of heteroatoms RDKit 10
Number of nitrogen atoms RDKit 4
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 7
Stereochemical complexity RDKit 0.16
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 18
Number of sp3 hybridized carbon atoms RDKit 25
Shape complexity RDKit 0.58
Number of rotatable bonds RDKit 7
Number of aliphatic carbocycles RDKit 3
Number of aliphatic heterocycles RDKit 7
Number of aliphatic rings RDKit 10
Number of aromatic carbocycles RDKit 1
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 1
Total number of rings RDKit 11
Number of saturated carbocycles RDKit 1
Number of saturated heterocycles RDKit 5
Number of saturated rings RDKit 6
Number of Smallest Set of Smallest Rings (SSSR) RDKit 11
Vincarubine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 2
Lipinski’s rule of 5 filter RDKit Failed
Number of Ghose filter violations RDKit 3
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.2261
Vincarubine
ADMET properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -7.92
Number of PAINS structural alerts SwissADME 1.0
Number of Brenk structural alerts SwissADME 3.0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes