IMPPAT Phytochemical information: 
Echitoserpidine
Echitoserpidine
Summary

SMILES: COC(=O)C1=C2Nc3c([C@@]42[C@@H]2[C@@](C1)(CCCN2CC4)[C@H](OC(=O)c1cc(OC)c2c(c1)OCO2)C)cccc3
InChI: InChI=1S/C30H32N2O7/c1-17(39-26(33)18-13-22(35-2)24-23(14-18)37-16-38-24)29-9-6-11-32-12-10-30(28(29)32)20-7-4-5-8-21(20)31-25(30)19(15-29)27(34)36-3/h4-5,7-8,13-14,17,28,31H,6,9-12,15-16H2,1-3H3/t17-,28+,29-,30+/m1/s1
InChIKey: YBIKFMPJKNFTQC-PTWHGLQUSA-N
DeepSMILES: COC=O)C=CNcc[C@]5[C@@H][C@@]C9)CCCN6CC9))))))[C@H]OC=O)cccOC))ccc6)OCO5))))))))))C)))))cccc6
Scaffold Graph/Node/Bond level: O=C(OCC12CC=C3Nc4ccccc4C34CCN(CCC1)C24)c1ccc2c(c1)OCO2
Scaffold Graph/Node level: OC(OCC12CCCN3CCC4(C(CC1)NC1CCCCC14)C32)C1CCC2OCOC2C1
Scaffold Graph level: CC(CCC12CCCC3CCC4(C(CC1)CC1CCCCC14)C32)C1CCC2CCCC2C1
Functional groups: c1cOCO1; cNC(=C(C(=O)OC)C)C; CN(C)C; cC(=O)OC; cOC
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Alkaloids and derivatives
ClassyFire Class: Aspidospermatan-type alkaloids
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tryptophan alkaloids
NP Classifier Class: Aspidosperma type
Synonymous chemical names:
echitoserpidine, Echitoserpidine
External chemical identifiers:
CID:CID_102090416
Chemical structure download
2D:2D MOL2D MOL22D SDF
3D:3D MOL3D MOL23D SDF3D PDB3D PDBQT
Echitoserpidine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 532.59
Log P RDKit 4.02
Topological polar surface area (Å2) RDKit 95.56
Number of hydrogen bond acceptors RDKit 9
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 30
Number of heavy atoms RDKit 39
Number of heteroatoms RDKit 9
Number of nitrogen atoms RDKit 2
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 4
Stereochemical complexity RDKit 0.13
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 16
Number of sp3 hybridized carbon atoms RDKit 14
Shape complexity RDKit 0.47
Number of rotatable bonds RDKit 7
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 4
Number of aliphatic rings RDKit 5
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 7
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 2
Number of saturated rings RDKit 2
Number of Smallest Set of Smallest Rings (SSSR) RDKit 7
Echitoserpidine
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 3
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.573143
Echitoserpidine
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Moderately soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.45
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME Yes