IMPPAT Phytochemical information: 
Pendulinin from plant Cocculus Pendulus

Pendulinin from plant Cocculus Pendulus
Summary

SMILES: Oc1cc2CCN([C@@H]3c2c2c1Oc1c(O2)c(O)cc2c1[C@H](Cc1ccc(Oc4cc(C3)ccc4O)cc1)N(CC2)C)C.CO.O
InChI: InChI=1S/C34H32N2O6.CH4O.H2O/c1-35-11-9-20-16-26(38)31-33-29(20)23(35)13-18-3-6-22(7-4-18)40-28-15-19(5-8-25(28)37)14-24-30-21(10-12-36(24)2)17-27(39)32(41-33)34(30)42-31;1-2;/h3-8,15-17,23-24,37-39H,9-14H2,1-2H3;2H,1H3;1H2/t23-,24-;;/m0../s1
InChIKey: RPESSPKYGBPBBL-WLKYSPGFSA-N
DeepSMILES: OcccCCN[C@@H]c6cc%10OccO6)cO)ccc6[C@H]CccccOcccC%22)ccc6O))))))))cc6)))))))NCC6))C))))))))))))))C.CO.O
Scaffold Graph/Node/Bond level: c1cc2cc(c1)Oc1ccc(cc1)CC1NCCc3ccc4c(c31)Oc1ccc3c(c1O4)C(C2)NCC3
Scaffold Graph/Node level: C1CC2CC(C1)OC1CCC(CC1)CC1NCCC3CCC4OC5C(CCC6CCNC(C2)C65)OC4C31
Scaffold Graph level: C1CC2CC3CCC(CC3)CC3CCCC4CCC5CC6C(CCC7CCCC(CC(C1)C2)C76)CC5C43
Functional groups: cO; CN(C)C; cOc; CO; O
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Lignans, neolignans and related compounds
NP Classifier Biosynthetic pathway: Alkaloids
NP Classifier Superclass: Tyrosine alkaloids
NP Classifier Class: Isoquinoline alkaloids
Synonymous chemical names:
pendulinin
External chemical identifiers:
CID:CID_54612433
Chemical structure download


Pendulinin from plant Cocculus Pendulus
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 614.7
Log P RDKit 5.13
Topological polar surface area (Å2) RDKit 146.59
Number of hydrogen bond acceptors RDKit 9
Number of hydrogen bond donors RDKit 4
Number of carbon atoms RDKit 35
Number of heavy atoms RDKit 45
Number of heteroatoms RDKit 10
Number of nitrogen atoms RDKit 2
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 2
Stereochemical complexity RDKit 0.06
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 24
Number of sp3 hybridized carbon atoms RDKit 11
Shape complexity RDKit 0.31
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 7
Number of aliphatic rings RDKit 7
Number of aromatic carbocycles RDKit 4
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 4
Total number of rings RDKit 11
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 11


Pendulinin from plant Cocculus Pendulus
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 2
Lipinski’s rule of 5 filter RDKit Failed
Number of Ghose filter violations RDKit 3
Ghose filter RDKit Failed
Veber filter RDKit Bad
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.186333


Pendulinin from plant Cocculus Pendulus
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -6.93
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No