IMPPAT Phytochemical information: 
Chamaecydin

Chamaecydin
Summary

SMILES: CC(C1=C2C3=C(C(=O)[C@@]42CC[C@]2([C@@H]4C2)C(C)C)C[C@@H]2[C@](C3=C(C1=O)O)(C)CCCC2(C)C)C
InChI: InChI=1S/C30H40O3/c1-15(2)20-22-21-17(26(33)30(22)12-11-29(16(3)4)14-19(29)30)13-18-27(5,6)9-8-10-28(18,7)23(21)25(32)24(20)31/h15-16,18-19,32H,8-14H2,1-7H3/t18-,19-,28-,29+,30-/m0/s1
InChIKey: CTGGVCKBMLNHNX-WLHXYQFRSA-N
DeepSMILES: CCC=CC=CC=O)[C@]5CC[C@][C@@H]5C3))CC)C)))))))C[C@@H][C@]C6=CC%10=O))O)))C)CCCC6C)C))))))))))))C
Scaffold Graph/Node/Bond level: O=C1C=C2C3=C(CC4CCCCC24)C(=O)C2(CCC4CC42)C3=C1
Scaffold Graph/Node level: OC1CC2C3CCCCC3CC3C2C(C1)C1(CCC2CC21)C3O
Scaffold Graph level: CC1CC2C3CCCCC3CC3C2C(C1)C1(CCC2CC21)C3C
Functional groups: CC1=C2CC(=O)C(=C2C(=C(O)C1=O)C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Lipids and lipid-like molecules
ClassyFire Class: Prenol lipids
ClassyFire Subclass: Diterpenoids
NP Classifier Biosynthetic pathway: Terpenoids
NP Classifier Superclass: Diterpenoids
NP Classifier Class: Abietane diterpenoids
Synonymous chemical names:
chamaecydin
External chemical identifiers:
CID:CID_101637219; ZINC:ZINC000169641498
Chemical structure download


Chamaecydin
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 448.65
Log P RDKit 6.89
Topological polar surface area (Å2) RDKit 54.37
Number of hydrogen bond acceptors RDKit 3
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 30
Number of heavy atoms RDKit 33
Number of heteroatoms RDKit 3
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 5
Stereochemical complexity RDKit 0.17
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 8
Number of sp3 hybridized carbon atoms RDKit 22
Shape complexity RDKit 0.73
Number of rotatable bonds RDKit 2
Number of aliphatic carbocycles RDKit 6
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 6
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 6
Number of saturated carbocycles RDKit 3
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 3
Number of Smallest Set of Smallest Rings (SSSR) RDKit 6


Chamaecydin
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 1
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 2
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Bad
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.500173


Chamaecydin
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Poorly soluble
Solubility class [Silicos-IT] SwissADME Poorly soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -4.47
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No