IMPPAT Phytochemical information: 
5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione

5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione
Summary

SMILES: COc1cc(O)c2c(c1)ccc1c2C(=O)C(=CC1=O)OC
InChI: InChI=1S/C16H12O5/c1-20-9-5-8-3-4-10-11(17)7-13(21-2)16(19)15(10)14(8)12(18)6-9/h3-7,18H,1-2H3
InChIKey: KYOONHCJRPIMJE-UHFFFAOYSA-N
DeepSMILES: COcccO)ccc6)cccc6C=O)C=CC6=O)))OC
Scaffold Graph/Node/Bond level: O=C1C=CC(=O)c2c1ccc1ccccc21
Scaffold Graph/Node level: OC1CCC(O)C2C1CCC1CCCCC12
Scaffold Graph level: CC1CCC(C)C2C1CCC1CCCCC12
Functional groups: cOC; cO; COC1=CC(=O)ccC1=O
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Benzenoids
ClassyFire Class: Phenanthrenes and derivatives
ClassyFire Subclass: Phenanthrols
NP Classifier Biosynthetic pathway: Polyketides
NP Classifier Superclass: Naphthalenes
NP Classifier Class: Naphthoquinones
Synonymous chemical names:
denbinobin, Denbinobin
External chemical identifiers:
CID:CID_10423984; ChEMBL:CHEMBL400925; ZINC:ZINC000014447744; SureChEMBL:SCHEMBL1010300
Chemical structure download


5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 284.27
Log P RDKit 2.46
Topological polar surface area (Å2) RDKit 72.83
Number of hydrogen bond acceptors RDKit 5
Number of hydrogen bond donors RDKit 1
Number of carbon atoms RDKit 16
Number of heavy atoms RDKit 21
Number of heteroatoms RDKit 5
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 14
Number of sp3 hybridized carbon atoms RDKit 2
Shape complexity RDKit 0.12
Number of rotatable bonds RDKit 2
Number of aliphatic carbocycles RDKit 1
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 1
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 2
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.91668


5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.85
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Moderately soluble
Blood Brain Barrier permeation SwissADME Yes
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.26
Number of PAINS structural alerts SwissADME 2
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME Yes
CYP2C9 inhibitor SwissADME Yes
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No


5-Hydroxy-3,7-dimethoxyphenanthrene-1,4-dione
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000351908MAP3K5814
ENSP00000304283RAC3800
ENSP00000348461RAC1800
ENSP00000376943BCL2L11800
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.