IMPPAT Phytochemical information: 
1-Deoxynojirimycin

1-Deoxynojirimycin
Summary

SMILES: OC[C@H]1NC[C@@H]([C@H]([C@@H]1O)O)O
InChI: InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1
InChIKey: LXBIFEVIBLOUGU-JGWLITMVSA-N
DeepSMILES: OC[C@H]NC[C@@H][C@H][C@@H]6O))O))O
Scaffold Graph/Node/Bond level: C1CCNCC1
Scaffold Graph/Node level: C1CCNCC1
Scaffold Graph level: C1CCCCC1
Functional groups: CO; CNC
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Piperidines
NP Classifier Biosynthetic pathway: Carbohydrates
NP Classifier Superclass: Aminosugars and aminoglycosides
NP Classifier Class: Aminosugars
Synonymous chemical names:
1-deoxymannojirimycin, 1-deoxynojirimycin
External chemical identifiers:
CID:CID_29435; ChEMBL:CHEMBL307429; ChEBI:CHEBI:44369; ZINC:ZINC000003794714; FDASRS:FZ56898FLE; SureChEMBL:SCHEMBL2969; MolPort-003-983-553
Chemical structure download


1-Deoxynojirimycin
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 163.17
Log P RDKit -2.97
Topological polar surface area (Å2) RDKit 92.95
Number of hydrogen bond acceptors RDKit 5
Number of hydrogen bond donors RDKit 5
Number of carbon atoms RDKit 6
Number of heavy atoms RDKit 11
Number of heteroatoms RDKit 5
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 4
Stereochemical complexity RDKit 0.67
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 0
Number of sp3 hybridized carbon atoms RDKit 6
Shape complexity RDKit 1
Number of rotatable bonds RDKit 1
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 1
Number of aliphatic rings RDKit 1
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 1
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 1
Number of saturated rings RDKit 1
Number of Smallest Set of Smallest Rings (SSSR) RDKit 1


1-Deoxynojirimycin
Drug-likeness properties
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 RDKit Passed
Number of Ghose rule violations RDKit 2
Ghose rule RDKit Failed
Veber rule RDKit Good
Egan rule RDKit Bad
GSK 4/400 rule RDKit Good
Pfizer 3/75 rule RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.28


1-Deoxynojirimycin
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Highly soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -8.57
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 0
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME No


1-Deoxynojirimycin
Human target proteins
Protein identifierHGNC symbolCombined score from STITCH database
ENSP00000305692GAA777
ENSP00000340466GANAB756
ENSP00000261267LYZ787
ENSP00000218516GLA831
ENSP00000360645MAN1B1723
ENSP00000447378MGAM747
ENSP00000314508GBA813
ENSP00000264382SI788
The human target proteins were predicted using STITCH, a database of Chemical-Protein interaction networks.