IMPPAT Phytochemical information: 
Betaine

Betaine
Summary

SMILES: [O-]C(=O)C[N+](C)(C)C
InChI: InChI=1S/C5H11NO2/c1-6(2,3)4-5(7)8/h4H2,1-3H3
InChIKey: KWIUHFFTVRNATP-UHFFFAOYSA-N
DeepSMILES: [O-]C=O)C[N+]C)C)C
Functional groups: CC(=O)[O-]; C[N+](C)(C)C
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organic acids and derivatives
ClassyFire Class: Carboxylic acids and derivatives
ClassyFire Subclass: Amino acids, peptides, and analogues
Synonymous chemical names:
trimethylglycine, betain, lycine, betaine, glycine-betaine, glycine betaine
External chemical identifiers:
CID:CID_247; ChEMBL:CHEMBL1182; ChEBI:CHEBI:17750; FDASRS:3SCV180C9W; SureChEMBL:SCHEMBL7739; MolPort-003-926-438
Chemical structure download


Betaine
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 117.15
Log P RDKit -1.56
Topological polar surface area (Å2) RDKit 40.13
Number of hydrogen bond acceptors RDKit 2
Number of hydrogen bond donors RDKit 0
Number of carbon atoms RDKit 5
Number of heavy atoms RDKit 8
Number of heteroatoms RDKit 3
Number of nitrogen atoms RDKit 1
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 1
Number of sp3 hybridized carbon atoms RDKit 4
Shape complexity RDKit 0.8
Number of rotatable bonds RDKit 2
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 0
Number of aromatic heterocycles RDKit 0
Number of aromatic rings RDKit 0
Total number of rings RDKit 0
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 0


Betaine
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 4
Ghose filter RDKit Failed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Bad
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.410409


Betaine
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Very soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME Low
Log Kp (Skin permeation, cm/s) SwissADME -7.11
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 1
CYP1A2 inhibitor SwissADME No
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME No
CYP3A4 inhibitor SwissADME No
P-glycoprotein substrate SwissADME Yes


Betaine
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000276ENSG00000272532CYP2D61565NPASS
TAR_EXP_000095ENSG00000224143EHMT210919NPASS
TAR_EXP_001808ENSG00000276582ABCB118647NPASS
TAR_EXP_001728ENSG00000176208ATAD579915NPASS
TAR_EXP_001631ENSG00000165409TSHR7253NPASS
TAR_EXP_000554ENSG00000101347SAMHD125939ChEMBL
TAR_EXP_000386ENSG00000123643SLC36A1206358NPASS
TAR_EXP_000280ENSG00000160868CYP3A41576NPASS
TAR_EXP_000097ENSG00000108468CBX110951NPASS
TAR_EXP_000273ENSG00000138109CYP2C91559NPASS