IMPPAT Phytochemical information: 
1,3,5,8-Tetrahydroxyxanthone

1,3,5,8-Tetrahydroxyxanthone
Summary

SMILES: Oc1cc(O)c2c(c1)oc1c(c2=O)c(O)ccc1O
InChI: InChI=1S/C13H8O6/c14-5-3-8(17)10-9(4-5)19-13-7(16)2-1-6(15)11(13)12(10)18/h1-4,14-17H
InChIKey: MPXAWSABMVLIBU-UHFFFAOYSA-N
DeepSMILES: OcccO)ccc6)occc6=O))cO)ccc6O
Scaffold Graph/Node/Bond level: O=c1c2ccccc2oc2ccccc12
Scaffold Graph/Node level: OC1C2CCCCC2OC2CCCCC21
Scaffold Graph level: CC1C2CCCCC2CC2CCCCC21
Functional groups: cO; coc; c=O
Chemical classification
ClassyFire Kingdom: Organic compounds
ClassyFire Superclass: Organoheterocyclic compounds
ClassyFire Class: Benzopyrans
ClassyFire Subclass: 1-benzopyrans
NP Classifier Biosynthetic pathway: Polyketides|Shikimates and Phenylpropanoids
NP Classifier Superclass: Xanthones
NP Classifier Class: Methyl xanthones
Synonymous chemical names:
1,3,5,8-tetrahydroxy xanthone, Demethylbellidifolin, 1,3,5,8-tetrahydroxyxanthone, 1,3,5,8-tetrahydroxy-xanthone, demethylbellidifolin
External chemical identifiers:
CID:CID_5281626; ChEMBL:CHEMBL184574; ChEBI:CHEBI:65480; ZINC:ZINC000006092269; SureChEMBL:SCHEMBL9838546; MolPort-020-005-911
Chemical structure download


1,3,5,8-Tetrahydroxyxanthone
Physicochemical properties
Property name Tool Property value
Molecular weight (g/mol) RDKit 260.2
Log P RDKit 1.77
Topological polar surface area (Å2) RDKit 111.13
Number of hydrogen bond acceptors RDKit 6
Number of hydrogen bond donors RDKit 4
Number of carbon atoms RDKit 13
Number of heavy atoms RDKit 19
Number of heteroatoms RDKit 6
Number of nitrogen atoms RDKit 0
Number of sulfur atoms RDKit 0
Number of chiral carbon atoms RDKit 0
Stereochemical complexity RDKit 0
Number of sp hybridized carbon atoms RDKit 0
Number of sp2 hybridized carbon atoms RDKit 13
Number of sp3 hybridized carbon atoms RDKit 0
Shape complexity RDKit 0
Number of rotatable bonds RDKit 0
Number of aliphatic carbocycles RDKit 0
Number of aliphatic heterocycles RDKit 0
Number of aliphatic rings RDKit 0
Number of aromatic carbocycles RDKit 2
Number of aromatic heterocycles RDKit 1
Number of aromatic rings RDKit 3
Total number of rings RDKit 3
Number of saturated carbocycles RDKit 0
Number of saturated heterocycles RDKit 0
Number of saturated rings RDKit 0
Number of Smallest Set of Smallest Rings (SSSR) RDKit 3


1,3,5,8-Tetrahydroxyxanthone
Drug-likeness
Property nameToolProperty value
Number of Lipinski’s rule of 5 violations RDKit 0
Lipinski’s rule of 5 filter RDKit Passed
Number of Ghose filter violations RDKit 0
Ghose filter RDKit Passed
Veber filter RDKit Good
Pfizer 3/75 filter RDKit Good
GSK 4/400 filter RDKit Good
Weighted quantitative estimate of drug-likeness (QEDw) score RDKit 0.361843


1,3,5,8-Tetrahydroxyxanthone
ADME properties
Property nameToolProperty value
Bioavailability score SwissADME 0.55
Solubility class [ESOL] SwissADME Soluble
Solubility class [Silicos-IT] SwissADME Soluble
Blood Brain Barrier permeation SwissADME No
Gastrointestinal absorption SwissADME High
Log Kp (Skin permeation, cm/s) SwissADME -6.40
Number of PAINS structural alerts SwissADME 0
Number of Brenk structural alerts SwissADME 2
CYP1A2 inhibitor SwissADME Yes
CYP2C19 inhibitor SwissADME No
CYP2C9 inhibitor SwissADME No
CYP2D6 inhibitor SwissADME Yes
CYP3A4 inhibitor SwissADME Yes
P-glycoprotein substrate SwissADME No


1,3,5,8-Tetrahydroxyxanthone
Phytochemical - Human target proteins supported by experimental evidence associations
Human target proteins supported by experimental evidence
IMPPAT target identifierGene identifierHGNC symbolEntrez Gene identifierSource
TAR_EXP_000331ENSG00000157540DYRK1A1859BindingDB, ChEMBL
TAR_EXP_000881ENSG00000087085ACHE43ChEMBL, NPASS
TAR_EXP_000852ENSG00000069535MAOB4129ChEMBL, NPASS
TAR_EXP_000167ENSG00000013441CLK11195BindingDB, ChEMBL
TAR_EXP_000851ENSG00000189221MAOA4128ChEMBL, NPASS
TAR_EXP_000660ENSG00000082701GSK3B2932BindingDB, ChEMBL
TAR_EXP_001295ENSG00000113240CLK457396BindingDB, ChEMBL
TAR_EXP_001772ENSG00000143479DYRK38444BindingDB, ChEMBL
TAR_EXP_001834ENSG00000176749CDK5R18851BindingDB, ChEMBL, NPASS
TAR_EXP_001823ENSG00000010219DYRK48798BindingDB, ChEMBL
TAR_EXP_000228ENSG00000213923CSNK1E1454ChEMBL
TAR_EXP_000169ENSG00000179335CLK31198ChEMBL
TAR_EXP_000168ENSG00000176444CLK21196BindingDB, ChEMBL
TAR_EXP_001875ENSG00000105204DYRK1B9149ChEMBL
TAR_EXP_001851ENSG00000282607MGAM8972ChEMBL
TAR_EXP_001775ENSG00000127334DYRK28445BindingDB, ChEMBL
TAR_EXP_000032ENSG00000164885CDK51020BindingDB, ChEMBL